Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs17672049 chr6:52881818 G/T 0 494 31 30.13 4.87 KM Plot
PRAD rs17678704 chr4:165643475 C/G 5.53E-5 494 30.78 32.15 44.32 KM Plot
PRAD rs17678751 chr4:165645939 A/G 5.68E-5 492 30.77 32.9 44.32 KM Plot
PRAD rs17678924 chr4:165691819 A/T 1.34E-6 494 61.83 27.87 31.13 KM Plot
PRAD rs17679851 chr6:111514388 C/T 5.48E-6 489 31.27 30.93 20.53 KM Plot
PRAD rs17684995 chr5:54749396 C/G 7.25E-6 494 32.13 24.25 29.17 KM Plot
PRAD rs17685439 chr17:62981333 A/C 6.92E-9 494 30.78 31.37 19.63 KM Plot
PRAD rs1769255 chr9:97368076 G/A 1.61E-5 486 17.07 25.68 32.43 KM Plot
PRAD rs17706759 chr12:52692207 A/G 6.24E-7 494 36.7 36.58 30.12 KM Plot
PRAD rs17717236 chr12:52838856 A/G 0.000132 494 29.23 36.05 22.2 KM Plot
PRAD rs1772825 chr1:201143683 G/C 4.24E-6 492 30.5 31.22 37.9 KM Plot
PRAD rs17776701 chr10:115922208 C/T 4.31E-10 494 31.18 29.87 16.57 KM Plot
PRAD rs17789570 chr7:6724344 G/A 2.51E-11 492 31.13 27.4 38.33 KM Plot
PRAD rs17789828 chr7:6738637 C/T 2.31E-11 494 31.07 27.77 38.33 KM Plot
PRAD rs17789894 chr7:6743097 A/C 2.97E-7 494 50.03 26.7 31.18 KM Plot